[Freesurfer] Pass code for freesurfer virtual images and QDEC question

2023-04-08 Thread mariangela asimina
External Email - Use Caution Dear freesurfer team, I have been asked to re-run my analysis with QDEC, so I need to install a previous version in another computer(windows) using virtual box. Could you please give me the pass code for the archive? Alternatively, is it possible to

Re: [Freesurfer] mris_flatten Version 6 vs. 7

2023-04-08 Thread Fischl, Bruce R.,PHD
External Email - Use Caution Can you try running it with -distances 20 20 added to the command line? From: Nasr, Shahin,Ph.D. Sent: Saturday, April 8, 2023 8:59 AM To: Freesurfer support list Cc: Fischl, Bruce R.,PHD Subject: Re: mris_flatten Version 6 vs. 7 Dear Bruce, I

Re: [Freesurfer] mris_flatten Version 6 vs. 7

2023-04-08 Thread Fischl, Bruce R.,PHD
p.s. adding -norand won’t fix the failed flattening, it will just make it repeatable. In my experience (admittedly a long time ago now), adding more distances and longer ranges fixes this problem From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Fischl, Bruce R.,PHD Sent: Saturday, Apr

Re: [Freesurfer] mris_flatten Version 6 vs. 7

2023-04-08 Thread Fischl, Bruce R.,PHD
Sorry, I don’t see what black dot you are referring to. As for being different, when the distances it uses are random it will change run to run. Basically you hope some of them prevent the patch from folding on itself (which it will definitely be prone to if the distances are only nearest neighb

Re: [Freesurfer] mris_flatten Version 6 vs. 7

2023-04-08 Thread Fischl, Bruce R.,PHD
External Email - Use Caution Moving the thread back to the list as I don’t know, but maybe someone else does? From: Nasr, Shahin,Ph.D. Sent: Saturday, April 8, 2023 4:10 PM To: Fischl, Bruce R.,PHD Subject: Re: mris_flatten Version 6 vs. 7 it doesn't exist in the cut, and I do