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Dear Freesurfers,
I hope this email finds you well. I am writing to you because I have concerns
about how acquisition parameters are biasing the results of a longitudinal
study I am running on Niftis that I have processed with Synth_SR.
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Correct Luis. But I am not sure why did verion 7 act like this.
Shahin Nasr, Ph. D.
Assistant Professor in Radiology
Harvard Medical School
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Thanks Louis!
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Vinke, Louis N.,PHD
Sent: Tuesday, April 11, 2023 6:08 PM
To: Freesurfer support list ; Nasr,
Shahin,Ph.D.
Subject: Re: [Freesurfer] mris_flatten Version 6 vs. 7
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I think it’s just a slight overlap of the flat map. In the FS6 version, using
the sulcal pattern as a reference you can see that the calcarine cut does go
all the way to that point/vertex. If you were to select two vertices on either
side of the
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I can't see anything wrong with what you have done (just use 1/6 instead
of 1.6, but that won't change your sig values). How was the aparc.stats
analysis done? Did you use the same FSGD file?
On 4/10/2023 10:09 AM, Christoph Aster wrote:
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I think it should mostly work. There might be a few places where the
pial surface includes a vessel because it is bright.
On 4/7/2023 1:49 PM, Carlos Alcocer wrote:
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Can you use T1 with contrast in freesurfer or
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not sure what you mean. It will accurately reflect the volume inside the
boundaries, but if the boundaries are off then the volume will be off
On 4/6/2023 1:52 PM, Carlos Alcocer wrote:
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Hi,
I am interested in
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It only ignores them if you use -auto-runseq Is that what you are doing?
On 4/5/2023 11:00 AM, Proulx, Jean Sebastien wrote:
Dear Freesurfer Team,
The help of dcmunpack says it will ignore scout scans. Is there
perhaps a hidden flag to avoid that
