[Freesurfer] trac-all with or without sub-thalamic nuclei segmentation

External Email - Use Caution Dear FreeSurfer developer. I successfully completed the tracula trac-all analysis using freesurfer 7.4.1. ThalamicNuclei.v13.T1.FSvoxelSpace.mgz images were obtained using segmentThalamicNuclei.sh, and trac-all analyses results were obtained using both

[Freesurfer] Hippo subfields long

External Email - Use Caution Hello everyone, Quick question. After running the longitudinal recon-all pipeline, is it required to run all subjects/tps through the segmentHA before running the segmentHA_long? If no, since I already ran the segment_HA in a few subjects, if I stop an

[Freesurfer] Cluster summary table

External Email - Use Caution Dear Experts, I calculated a conjunction using "mri_concat". I have a beautiful map but I need a cluster summary table for it. How can I get that? Best, Maria Czarnecka ___ Freesurfer mailing list Freesurfer

Re: [Freesurfer] mris_label2annot

External Email - Use Caution Dear Yujing, Thank you so much for your answer. Everything works now. Best, Maria Czarnecka pt., 30 cze 2023 o 16:59 Maria Czarnecka napisał(a): > Dear Yujing, > > Thank you so much for your answer. > My ctab looks like this: > > 11100 Unknown

[Freesurfer] Error Help

External Email - Use CautionHi, I am new to FS and recently downloaded the package per instructions on your site. I set up the path and everything seems to be fine until I attempt to use any functions.I have searched for answers on this error, but I cannot seem to find anything so I