Re: [Freesurfer] Easyreg > cortical parcels missing after SynthSeg with --parc option ?

2023-08-23 Thread Iglesias Gonzalez, Juan E.
External Email - Use Caution Got it! So: if you delete ima1_synthseg.nii.gz and ima2_synthseg.nii.gz, and then run the full command: mri_easyreg --ref ima1.nii.gz --flo ima2.nii.gz --ref_seg ima1_synthseg.nii.gz --flo_seg ima2_synthseg.nii.gz --ref_reg ima1-reg.nii.gz

Re: [Freesurfer] surface label generation from vertex?

2023-08-23 Thread Fischl, Bruce R.,PHD
External Email - Use Caution Hi Jason There are morphological tools built into freeview, so you could select a single vertex, make a label from it, then dilate it as many times as you want. That will of course give you the graph distance not the actual surface geodesic, but

[Freesurfer] surface label generation from vertex?

2023-08-23 Thread Jason Tourville
External Email - Use Caution Hi Freesurfers, I would like to generate a label that extends some distance from a chosen vertex on the surface. Is this possible in the freeview gui? Otherwise? Many thanks for you feedback. Best, Jason

[Freesurfer] The national, longitudinal Midlife in the U.S. (MIDUS) study is recruiting a multimodal imaging scientist to the Affective Neuroscience Project

2023-08-23 Thread STACEY M SCHAEFER
External Email - Use Caution The Affective Neuroscience Project of the longitudinal Midlife in the US (MIDUS) study is recruiting a multimodal imaging scientist to help investigate the socioemotional determinants of health, wellbeing, and brain aging in our multimodal

Re: [Freesurfer] Easyreg > cortical parcels missing after SynthSeg with --parc option ?

2023-08-23 Thread Eric BARDINET
External Email - Use Caution Hola Eugenio, I first tried > mri_easyreg --ref ima1.nii.gz --flo ima2.nii.gz Answer > Error : Reference segmentation must be provided Comment > Warning : TF-TRT Warning: Could not find TensorRT Then I ran mri_synthseg > mri_synthseg --i

[Freesurfer] FreeSurfer 7Zip archive passcode

2023-08-23 Thread Byripudi Naveen Kumar ed20d402
External Email - Use Caution Dear experts, I am trying to install Freesurfer on the VitualBox. However I do not have access to unzip the ova.7z file. Can you kindly provide me with the passcode of FS_7_2_0_ubuntu_18_04_06.ova.7z? Sincerely Naveen

Re: [Freesurfer] Freeview output viewing error

2023-08-23 Thread fsbuild
External Email - Use Caution If you search the freesurfer mail archives for WSL you should find postings about how to setup an X-server on the windows host in order for Linux applications to run in WSL and use X-Windows to display images. We provide some documentation, however