Re: [Freesurfer] mri_watershed Error while running recon-all

2023-08-27 Thread Huang, Yujing
External Email - Use Caution I noticed all 292 images were processed in the same recon-all. I’m wondering if they are from the same subject. If they are data from longitudinal study, you can process them with longitudinal pipeline - https://secure-web.cisco.com/1DWOFf8HXjewTlD

Re: [Freesurfer] mri_watershed Error while running recon-all

2023-08-27 Thread Fischl, Bruce R.,PHD
External Email - Use Caution This happens in one case or in all 292? You should follow the processing stream backwards to see where things first went wrong. It could be the skull stripping, but it might also be one of the inputs to it is already incorrect like the T1.mgz or tra

[Freesurfer] CSF map

2023-08-27 Thread Michael Mc Laughlin
External Email - Use Caution Hi, recon-all does not seem to produce a map of CSF. My research is especially interested in how CSF is distributed. Is there a way to get this? Michael McLaughlin, ___ Freesurfer mailing list Freesurfer@nmr