[Freesurfer] Problem with tkregister2/tkregisterfv

External Email - Use Caution Good afternoon, I’m trying to run “tkregister2” in the following code for a manual registration correction: tkregister2 --mov ./fMRI_run1.nii.gz --reg ./Reg.lta --surfs --sd ${SubjectsFolder} The above command works fine in older versions of

[Freesurfer] Longitudinal multimodal processing

External Email - Use Caution Dear experts in longitudinal neuroimaging We carefully read the papers about possible biases introduced by treating timepoints images differently (Reuter and Fischl NI 2011, for example) to estimate unbiased anatomical and functional changes of brain

Re: [Freesurfer] mri_convert: Segmentation fault (core dumped) synthsr scan

External Email - Use Caution I looked through the thread and downloaded VirtualBox. Freesurfer 5.1 installation was working fine but mounting my drive and sharing folders required so many libraries which are now defunct, it just wasn't worth it. I wrangled with the machine for

Re: [Freesurfer] freeview upgrade isn’t working/library issue

External Email - Use Caution I don't think we can guarantee upgrading freeview will work with the existing libraries in a sufficiently old freeview distribution. I’m not sure what version of Ubuntu is running from the kernel listed below, but you could create a backup of your

[Freesurfer] Recall: freeview upgrade isn’t working/library issue

External Email - Use Caution Hoptman, Matthew (NKI) would like to recall the message, "freeview upgrade isn’t working/library issue". IMPORTANT NOTICE: This e-mail is meant only for the use of the intended recipient. It may contain confidential

[Freesurfer] freeview upgrade isn’t working/library issue

External Email - Use Caution TO: freesurfer@nmr.mgh.harvard.edu FROM: matthew.hopt...@nki.rfmh.org SUBJECT: freeview upgrade isn’t working/library issue Hello FreeSurfer Developers, I followed the instructions here to upgrade freeview: