Re: [Freesurfer] SynthSeg volume labels

2023-10-05 Thread Weerasekera, Akila,PHD
External Email - Use Caution Thanks Eugenio and Avinsh! Akila Weerasekera, PhD | Postdoctoral Research Fellow Maria Mody lab for Developmental Language and Reading Research Laboratory | Eva Ratai Lab for Clinical Spectroscopy | Garry Nolan Lab (Stanford University) | Harva

Re: [Freesurfer] SynthSeg volume labels

2023-10-05 Thread Iglesias Gonzalez, Juan E.
External Email - Use Caution Dear Akila, The error stems from trying to write the outpus of –qc and –vol to the same CSV file. We’ll add a check to the code to make sure that an error is thrown if both files are the same. Cheers, /Eugenio -- Juan Eugenio Iglesias http://secure-w

Re: [Freesurfer] SynthSeg volume labels

2023-10-05 Thread Kumar, Avnish
External Email - Use Caution Thanks for sharing the CSV Akila. Could you also share what command you used to generate this CSV and the corresponding terminal output please? I was not able to recreate this error on my end. From: freesurfer-boun...@n

[Freesurfer] Project volumetric MTR data on surface

2023-10-05 Thread Davide Tabarelli
External Email - Use Caution Dea FreeSurfer experts, I’m writing in order to ask how to map on a surface data from a volumetric MTR image. I have volumetric Magnetization Transfer Ratio data co-registered to the subject native space of a subject (as produced by recon-all on a T