Re: [Freesurfer] [WARNING: ATTACHMENT(S) MAY CONTAIN MALWARE]Re: Stools error query

2023-10-16 Thread Elizabeth Haris
External Email - Use Caution Hi Kersten, Ah yes, that would be it. I am using data from a 7T scanner, so wanted it to be processed at the best resolution possible, hence using the -cm command. Many thanks, Elizabeth From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of

Re: [Freesurfer] Freeview misaligned surfaces "warning matrixinverse failed"

2023-10-16 Thread Andrei Bieger
External Email - Use Caution I tried loading the files from the terminal and from freeview's GUI. They all return the same issue with the surfaces. And I just sent the files to your email. Andrei Em seg., 16 de out. de 2023 às 12:00, Wang, Ruopeng escreveu: > Did you load

Re: [Freesurfer] Freeview misaligned surfaces "warning matrixinverse failed"

2023-10-16 Thread Wang, Ruopeng
Did you load everything from the command-line? Or did you load the surface first and then load the volume from the GUI. Again, would be very helpful if you can send us the exact volume and surface files so we can diagnose. On Oct 16, 2023, at 10:47 AM, Andrei Bieger

Re: [Freesurfer] Freeview misaligned surfaces "warning matrixinverse failed"

2023-10-16 Thread Wang, Ruopeng
Would it be possible to send us the volume and the surface files? If the volume geometric info from the surface is missing or wrong, it would be unlikely to align with the volume. Ruopeng On Oct 15, 2023, at 11:06 AM, Andrei Bieger mailto:andreibie...@gmail.com>> wrote: External

Re: [Freesurfer] [WARNING: ATTACHMENT(S) MAY CONTAIN MALWARE]Re: Stools error query

2023-10-16 Thread Diers, Kersten /DZNE
External Email - Use Caution Hello Elizabeth, thank you for giving the new version of the toolbox a try as well. Since the error persists: my suspicion is that not all of your images have the canonical ("FreeSurfer - conformed") dimensions of 256 x 256 x 256 voxels, maybe

Re: [Freesurfer] Longitudinal multimodal processing

2023-10-16 Thread gabriel robert
External Email - Use Caution Dear Prof Greve, Many thanks for your reply, Could you please confirm also the second part of the sentence ? " [...] given the sample size this is likely to be marginal compared to the effect size and results would still be interpretable... " Sorry