Re: [Freesurfer] Longitudinal multimodal processing

2023-10-17 Thread 姜黎黎
External Email - Use Caution Thanks for your email. -原始邮件- 发件人:"gabriel robert" 发送时间:2023-10-16 15:06:38 (星期一) 收件人: "Freesurfer support list" , "Vaidya, Nilakshi" 抄送: 主题: Re: [Freesurfer] Longitudinal multimodal processing External Email - Use Caution

[Freesurfer] Atrophy Maps on Coronal Slices

2023-10-17 Thread Daniel Gutstein
External Email - Use Caution Is there a methodology in FreeSurfer for creating atrophy maps and displaying them on individual coronal slices? Thank you. Daniel Gutstein Research Data Analyst Northwestern University | Mesulam Center for Cognitive Neurology & Alzheimer's

[Freesurfer] Common space

2023-10-17 Thread Alberto Del Cerro Leon
External Email - Use Caution Good morning, I would be interested in observing regional differences in cortical thickness without using predefined regions. However the results offered by FreeSurfer arrange the thickness results etc. in an individual space which is difficult to

Re: [Freesurfer] [WARNING: ATTACHMENT(S) MAY CONTAIN MALWARE]Re: Stools error query

2023-10-17 Thread Diers, Kersten /DZNE
External Email - Use Caution Hello, and thanks for the confirmation. Then I'll try to make the toolbox run with these image dimensions / resolutions also; will take approximately one week, I guess. Best regards, Kersten On Mon, 2023-10-16 at 21:15 +, Elizabeth Haris

Re: [Freesurfer] FreeSurfer License

2023-10-17 Thread Lauren Stephens
External Email - Use Caution Hi Camille,

[Freesurfer] FreeSurfer License

2023-10-17 Thread Camille Fakche
External Email - Use Caution Dear FreeSurfer community, I would like to obtain a free license to use FreeSurfer, I hope I am sending the request in the right place. Thank you, Camille. -- FAKCHE Camille Post Doctoral Researcher Centre for Human Brain Health (CHBH) University of

Re: [Freesurfer] Freeview misaligned surfaces "warning matrixinverse failed"

2023-10-17 Thread Marina Fernández
External Email - Use Caution Hi Andrei, I was referring to .bashrc file located in these directories: /root/.bashrc /home/'your_user'/.bashrc ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

Re: [Freesurfer] Freeview misaligned surfaces "warning matrixinverse failed"

2023-10-17 Thread Andrei Bieger
External Email - Use Caution Indeed, the /usr/local/freesurfer/.bashrc file is empty Trying to set the FS_DISABLE_LANG to true or false also had no consequences. But thank you, anyway. Andrei Em ter., 17 de out. de 2023 às 07:45, fsbuild escreveu: > > From what I can see, the

Re: [Freesurfer] Freeview misaligned surfaces "warning matrixinverse failed"

2023-10-17 Thread fsbuild
External Email - Use Caution From what I can see, the freesurfer release 7 installers do not modify the shell init file, e.g., bashrc, and neither did the VM provided in the past with freesurfer 7.2.0 pre-installed have an entry with FS_DISABLE_LANG set in the bashrc file. - R.

Re: [Freesurfer] Freeview misaligned surfaces "warning matrixinverse failed"

2023-10-17 Thread Marina Fernández
External Email - Use Caution Hi Andrei and Freesurfer experts, We had the same problem in the past and we noticed there was an extra line in the .bashrc file of Ubuntu: export FS_DISABLE_LANG="true" Deleting this line solves the problem. The .bashrc file should contain only the