And how did you create 001.mgz? Sometimes SPM will put NaNs in the
image to indicate a mask.
On 11/17/2023 10:12 AM, Huang, Yujing wrote:
Hi Carlos,
Can you attach recon-all.log?
Best,
Yujing
*From:* freesurfer-boun...@nmr.mgh.harvard.edu
*On Behalf Of *Carlos Alcocer
*Sent:* Thursday,
External Email - Use Caution
Hello,According to the FAQ for earlier version of Freesurfer (maybe 6.x), the
instruction is below.First you must run only -autorecon1 like this:recon-all
-autorecon1 -noskullstrip -s Then you will have to make a symbolic link
or copy T1.mgz to brain