External Email - Use Caution
It
reads like something is not right with your setup/shell environment.
Once you have setup the freesurfer environment via, e.g.,
$ export FREESURFER_HOME=/usr/local/freesurfer/7.4.1$ source
$FREESURFER_HOME/SetupFreesurfer.sh
freesurfer
External Email - Use Caution
Hello Sophie,
Just FYI, there is no matlab distribution included in the 7.4.1 release
and we so not support using R2023b. So I presume someone at your site
installed R2023b separately via a Mathworks matlab installer. We do
provide a script
‘mri_aparc2aseg’ adjusts Yeo’s 17 Network segmentation value to 1000+ for lh,
and 2000+ for rh. I don’t think you can use Freeview with
‘1000subjects_reference/Yeo_JNeurophysiol11_SplitLabels/MNI152/17Networks_ColorLUT_freeview.txt’,
which labels from 1-114.
You may find it helpful
https://git
External Email - Use Caution
Dear Freesurfer experts,
I’m sorry, I would like to add some missing information about the following
question.
OS: CentOS Linux 7
FS ver: fs7.1.0
Matlab ver: R2017a or R2022a
I would be grateful for your answer when you have time.
Best,
Daiki Sasa
External Email - Use Caution
Hello Freesurfer Developers,
I want to extract the beta values for an fMRI dataset that I analyzed with
FSFAST, so that I get one beta map (in the ras space) per condition/regressor.
The dataset has 5 conditions/regressors specified in the paradigm f
In your terminal, after you copy a file, what are the permissions of the new
file?
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Gool, J.K. (Jari)
Sent: Friday, November 24, 2023 9:18 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] Automatic prompt reply for freesurfer sub
External Email - Use Caution
Dear Yujing,
Thank you for the quick reply. When I enter umask in my terminal I already get
0002 as output so I think this is not the issue. Is there anything else I could
do?
Kind regards,
Jari Gool | MD-PhD candidate
Department of Anatomy & N
It looks like "imageDump.mgz" is copied to the directory during segmentation.
Can you check your 'umask'?
>umask
I think "mode 0444 (r--r--r--)" is caused by the umask setting to 0222. Try to
change your umask to 0002 in .bashrc or .profile - add a line 'umask 0002'.
Best,
Yujing
From: freesu
External Email - Use Caution
Dear Freesurfers,
In using SynthSeg, I have observed that the quality control value for the
hippocampus+amygdala seems to be directly correlated with the hippocampal
volume. Higher QC values = higher volumes. There also seems to be an age
effect on t
