Hi, sorry for the many months to get back to you. I have just updated
the documentation on https://surfer.nmr.mgh.harvard.edu/fswiki/PetSurfer
to indicate how to use your own segmentations. I'm assuming that you
have a volume with choroid plexus labeled that you want to merge into
the stream.
External Email - Use Caution
Hi,
I have longitudinal data with MEMPRAGE. I want to improve white-gray matter
boundaries by using dura flag. But I’m a bit lost about how to do it. Your
previous recommendations to use echoes with “mri_make_surfaces” function, yet
the surfaces onl
It looks like mris_compute_lgi won't work with *any* mcr and needs a full
matlab installation.
Sorry :(
-Paul
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Na, Xiaoxu
Sent: Thursday, December 7, 2023 1:00 PM
To: Freesurfer support list
Sub
I just tried this in a container. It looks like `mris_compute_lgi` is not
designed to work with the mcr, and needs a full matlab installation.
I started by jumping into a freesurfer 7.3.1 container.
```
docker run -it --rm freesurfer/freesurfer:7.3.2
```
Then I installed matlab mcr
```
fs_insta
Hi Xiaoxu,
This is how I built a FreeSurfer 7.1.1 container with matlabmcr 2014b
(https://github.com/pwighton/fs-docker/blob/master/notes/20201127-fs711-neurodocker-min.md#freesurfer711)
```
neurodocker generate docker \
--base continuumio/miniconda:4.7.12 \
--pkg-manager apt \
--freesurfer
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Thank you for your information! However, even though I appended the temporary
paths that were generated right after running mcr installation. While running,
I first printed out the $ LD_LIBRARY_PATH, it seems right. However, the same
error occurred.
External Email - Use Caution
Dear Freesurfer Experts,
I am currently engaged in a project where I need to measure the cortical
thickness of a segmented cortical lesion (ROI) in the volume space.
After running recon-all for my subjects, i employed 'mri_vol2surf' function to
External Email - Use Caution
Dear Freesurfer Experts,
I am currently engaged in a project where I need to measure the cortical
thickness of a segmented cortical lesion (ROI) in the volume space.
After running recon-all for my subjects, i employed 'mri_vol2surf' function to
