External Email - Use Caution
Sorry, posting again for FS experts.
Jim
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Alexopoulos, Dimitrios
Sent: Tuesday, December 12, 2023 4:23 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] FS 6.0 outputs for use with 7
Your recon-all was killed – “Command terminated by signal 9”.
Was your VM VirtualBox up and running the whole time?
Best,
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Fargol Rezayaraghi
Sent: Friday, December 15, 2023 3:15 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Fr
Can you try ‘mri_segstats’? It will compute statistics on segmented volumes -
https://surfer.nmr.mgh.harvard.edu/fswiki/mri_segstats
Yujing
From: Ahsan Ali
Sent: Friday, December 15, 2023 10:57 AM
To: Freesurfer support list ; Huang, Yujing
; Fischl, Bruce R.,PHD
Subject: Re: [Freesurfer] S
External Email - Use Caution
Hi,
Sure.
I have used this command for segmentation: "recon-all -s name -i name.nii
-all"
Then I used "mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto_CCseg.mgz -f"
command to estimate only fornix.
Now I have fornix.mgz file in which only one
Hi Ahsan,
Can you specify the commands that you have tried?
Best,
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Ahsan Ali
Sent: Thursday, December 14, 2023 11:02 PM
To: Fischl, Bruce R.,PHD ;
freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Statistical Characteristics
Freesurfer only handles nifty-1 now.
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Patricia Pais Roldan
Sent: Thursday, December 14, 2023 8:17 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] cannot read nifti-2 files in freesurfer - files ok in AFNI
Exte
Can you check if you have any extra empty lines after your last ‘Input’?
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Laura Willers de Souza
Sent: Thursday, December 14, 2023 3:16 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] aparcstats2table - IndexError
Ext
