[Freesurfer] WMH-SynthSeg vs. SAMSEG for WM lesions

2024-01-04 Thread SudEEpti
External Email - Use Caution Hello Freesurfer I am reaching out for some advice on unsupervised WM lesion detection using SAMSEG and WMH-SynthSeg. *SAMSEG: * Our use case prioritizes maximizing true positives over minimizing false positives. However, even with a low threshold of

Re: [Freesurfer] Freeview not showing output

2024-01-04 Thread fsbuild
External Email - Use Caution As Ruopeng said, even if simple X-Windows programs like glxgears run, that does not mean freeview will display graphics. If freeview is not displaying images after X-ming (or a different) X-Windows server runs on the Windows host and displays

[Freesurfer] SynthSR for T2-weighted images

2024-01-04 Thread hmarz...@student.ubc.ca
External Email - Use Caution Hello Eugenio, I wanted to inquire whether you have plans to create a tool for synthesizing T2-weighted low-field MRI images similar to SynthSR, which was developed for T1-weighted images. I'm in need of synthesizing T2-weighted images for

[Freesurfer] Postdoctoral Fellowship in Traumatic Brain Injury and Post-traumatic Epilepsy Neuroimaging

2024-01-04 Thread Gugger, James J
External Email - Use Caution Postdoctoral Fellowship in Traumatic Brain Injury and Post-traumatic Epilepsy Neuroimaging Description: The Department of Neurology at the University of Pennsylvania Perelman School of Medicine is seeking postdoctoral fellows interested in

Re: [Freesurfer] Freeview not showing output

2024-01-04 Thread Wang, Ruopeng
It appears your system has some problem displaying OpenGL content properly. I’m not familiar with Xming. Can you try some other x display for Windows such as mobaxterm? https://mobaxterm.mobatek.net/ On Jan 4, 2024, at 6:11 AM, Shawa, Zeena mailto:zeena.shawa...@ucl.ac.uk>> wrote:

Re: [Freesurfer] Freeview not showing output

2024-01-04 Thread Shawa, Zeena
External Email - Use Caution Hi Ruopeng, Thank you for your quick reply! When running glxgears I just see a blank window. Sincerely, Zeena Shawa From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Wang, Ruopeng Sent: Wednesday, January 3, 2024 4:29 PM To: Freesurfer

[Freesurfer] dmri_pathstats error: segmentation fault after check the number of non-truncated streamlines

2024-01-04 Thread Rosie
External Email - Use Caution Hello FreeSurfer Developers, I am attempting to project my fiber tract endpoint into the inflated surface. According to the code in trac-paths, it needs to create the endpoint volume file by dmri_pathstats. But when the number of non-truncated