[Freesurfer] Longitudinal Freesurfer in the presence of large tissue defects

2024-02-03 Thread Philip P
External Email - Use Caution Dear Freesurfer Developers, I am currently running the Longitudinal Pipeline on a cohort with significant portions of brain tissue removed. The obtained base templates overall look reasonable, however, when overlaying the transformed session T1ws

Re: [Freesurfer] Mac OS M2 M3 computers

2024-02-03 Thread Fatima Karim
External Email - Use Caution I have been using free surfer for a year nowon Mac m2 max and it's working fine. On Sat, Feb 3, 2024, 23:42 Charles Leger wrote: > External Email - Use Caution > > There seems to be some contention if FreeSurfer will support Mac OS > silicon

[Freesurfer] Mac OS M2 M3 computers

2024-02-03 Thread Charles Leger
External Email - Use Caution There seems to be some contention if FreeSurfer will support Mac OS silicon (M2, M3) computers. In the technical requirements section, it is clearly specified that a " 3D graphics card with its own graphics memory & accelerated OpenGL drivers" is

[Freesurfer] if: Expression Syntax - preproc-sess

2024-02-03 Thread Stefano Delli Pizzi
External Email - Use Caution Hello FreeSurfer Developers, I'm attempting to run preproc-sess with -nomc option preproc-sess -s subj -surface fsaverage lhrh -fwhm 0 -nomc -mni305 -fsd rest -per-run -sliceorder up -force if: Expression Syntax. This error occurred before to create