[Freesurfer] mris_convert reading surf.gii files?

2024-02-24 Thread Westin, Karin
External Email - Use Caution Hi I'm trying to create an .annot file from a label.gii file using an HCP fsavarage.surf.gii file (eg mris_convert --annot my_label.label.gii fsaverage_template.L.surf.gii lh.my_annot.annot). However I keep getting the error ** failed to open GIF

Re: [Freesurfer] consistency in recon-all parallel pipeline

2024-02-24 Thread Douglas N. Greve
Can you try it with -threads instead? We don't typically use -parallel On 2/23/2024 2:44 PM, Horn, Mitchell Jacob wrote: This is all with ‘recon-all -parallel’ Thanks, Mitch *From:*freesurfer-boun...@nmr.mgh.harvard.edu *On Behalf Of *Huang, Yujing *Sent:* Friday, February 23, 2024 2:30 P