[Freesurfer] (no subject)

2024-09-09 Thread Matthew Lynch
External Email - Use Caution I run this command: mri_synthseg --i /mnt/p/test/test-t2-3mm.nii --parc --robust --o /mnt/p/test and it fails with the following (partial) error message: Node: 'model_3/unet_conv_downarm_0_0/Conv3D' DNN library is not found. which I assume means it

[Freesurfer] Installer for Silicon M1, M2, M3 Macs (was Re: Freesurfer for MacOS))

2024-09-09 Thread fsbuild
External Email - Use Caution  If you are using a Silicon Mac with an M1, M2, M3 chip, then please download and install the arm64 freesurfer development .pkg installer via the link,  freesurfer-macOS-darwin_arm64-dev.pkg Right click on the file freesurfer-macOS-darwin_arm64-dev.pk

[Freesurfer] Freesurfer for MacOS

2024-09-09 Thread Alisha Davis
External Email - Use Caution Hello, My name is Alisha Davis, and I have been using Freesurfer over the past few weeks for an MRI project but have encountered a few issues due to the version of my computer. Is there a plan to release a newer version of Freesurfer compatible with

Re: [Freesurfer] installation on Linux server incompatible with python2?

2024-09-09 Thread fsbuild
External Email - Use Caution  You could try first installing rocky8, then install freesurfer, then *upgrade* the machine to rocky9, though you still may not have python2 after the upgrade.   We have not run into any issues so far running the freesurfer rocky8 binaries on rocky9.

[Freesurfer] installation on Linux server incompatible with python2?

2024-09-09 Thread Gowin, Joshua
External Email - Use Caution Hello FreeSurfer community, We are trying to install FreeSurfer on a new server that uses Rocky Linux 9.4 (Blue Onyx). Unfortunately, python2 is not available on this Linux version, but we believe it is necessary to run FreeSurfer. Are there possi

[Freesurfer] UNABLE TO MAKE EDITS AFTER SIMNIBS

2024-09-09 Thread Cesar Zabdiel Gutierrez Mendoza (czgtrrzm)
External Email - Use Caution Hello to all, I am attempting to do a simple editing on Freesurfer where I just want to do manual voxel editing. I am working off of the “Ernie” model from SimNibs. I ran charm on simnibs to get a mesh. After I received the mesh, I used the “labeli