External Email - Use Caution
Hi!
I'm trying to run recon-all-clinical but I'm running into an error with the
SynthSeg at the very beginning. Do you have any hints what the problem
might be here? Here's the full error message:
the following problem occured with image [mypath]/mri/
Freesurfer version you are
> running. From your path /usr/local/freesurfer it looks like you are
> running a Freesurfer release, e.g.., 7.4.1.
>
> - R.
>
> On Feb 25, 2024, at 21:45, Agata Wolna wrote:
>
> External Email - Use Caution
>
> Hi!
>
> I
ning the script in a singularity containers).
Best wishes,
Agata
pon., 26 lut 2024 o 11:02 Agata Wolna napisaĆ(a):
> Hi!
>
> Thanks for getting back to me. I'm running it on CentOS Linux 7 in a
> singularity container. What I did is to pull the freesurfer container from
> the Do
External Email - Use Caution
Hi!
I have a question regarding the recon-all-clinical pipeline: is it possible
to edit the outputs of the synthseg segmentation run as a part of the
pipeline (synthseg.mgz) similarly to editing recons from the standard
freesurfer pipeline, and getting