External Email - Use Caution Hello FreeSurfer Developers,
I'm attempting to run the longitudinal pipeline for recon-all outside of fmriprep. The first step, cross, ran fine and I received the expected outputs. I started the base step and for most of my subjects it appears to be working but for some of my subjects I get the following error when running the mri_robust_template command: Internal Error for tp 0 -> template Rotation should not scale ( 1.23014e-05 ) I've searched the list and no similar errors have been reported outside of fmriprep forums that I can find. Does anyone have any thoughts on how to troubleshoot this issue? Also, I’ve attached the recon-all.log in case it's of any use. 1) FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c 2) Platform: Red Hat Enterprise Linux Server, VERSION=7.7 (Maipo). This is being run on a HPC server. 3) uname -a: Linux c0072 3.10.0-1062.9.1.el7.x86_64 #1 SMP Mon Dec 2 08:31:54 EST 2019 x86_64 x86_64 x86_64 GNU/Linux 4) recon-all.log: see attached Thank you, Mandy Mandy K. Biles, MS | PhD Candidate Psychology/Behavioral Neuroscience Program UAB | The University of Alabama at Birmingham CIRC Suite 252A | 1719 6th Avenue South | Birmingham, AL 35294 P: 205.975.4060 | mkbi...@uab.edu uab.edu<http://uab.edu>
recon-all.log
Description: recon-all.log
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