Hi,
I pasted an error that I am receiving in qdec below. SUBJECTS_DIR is
/space/lightning/2/users/NEAA-freesurfer. If you need any more information
from me I will be happy to provide it. Any help is much appreciated.
Thanks,
troy:cameo[87] ERROR: QdecGlmDesign::GenerateContrasts: factor 1 must
have 2 levels
ninputs = 48
Checking inputs
nframestot = 48
Allocing output
Writing to /autofs/space/lightning_002/users/NEAA-freesurfer/qdec/NEA
A-freesurfer/y.mgh
gdfReadHeader: reading /autofs/space/lightning_002/users/NEAA-freesur
fer/qdec/NEAA-freesurfer/qdec.fsgd
INFO: DeMeanFlag keyword not found, DeMeaning will NOT be done.
Continuous Variable Means (all subjects)
0 txt-untxt 1.01875
Class Means of each Continuous Variable
1 groupPH-gendermale 2.8400
2 groupPL-gendermale 0.5333
3 groupVH-gendermale 0.6000
4 groupVL-gendermale -0.4667
5 groupPH-genderfemale 1.0857
6 groupPL-genderfemale 0.0833
7 groupVH-genderfemale 3.1167
8 groupVL-genderfemale 0.6500
INFO: gd2mtx_method is dods
Reading source surface /autofs/space/lightning_002/users/NEAA-freesur
fer/fsaverage/surf/lh.white
reading group avg surface area 822 cm^2 from file
Reading in average area /autofs/space/lightning_002/users/NEAA-freesu
rfer/fsaverage/surf/lh.white.avg.area.mgh
ERROR: no contrasts specified
Error in Analyze: command failed: mri_glmfit --y /autofs/space/lightn
ing_002/users/NEAA-freesurfer/qdec/NEAA-freesurfer/y.mgh --fsgd /auto
fs/space/lightning_002/users/NEAA-freesurfer/qdec/NEAA-freesurfer/qde
c.fsgd --glmdir /autofs/space/lightning_002/users/NEAA-freesurfer/qde
c/NEAA-freesurfer --surf fsaverage lh --label /autofs/space/lightning
_002/users/NEAA-freesurfer/fsaverage/label/lh.cortex.label
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