External Email - Use Caution
Hello,
I’ve run both longitudinal and cross-sectional TRACULA pipelines on the same
dataset, and I’ve found surprisingly low correlations of FA measurements for
several tracts (as low as r= .1 in some cases). Which measurement should be
considered
External Email - Use Caution
Hello,
I'm running into an error in the longitudinal TRACULA pipeline that I'm not
sure how to resolve. I saw this error in the message board but there was no
resolution to the problem so I thought I'd ask again. I've successfully run the
recon-all
Hello,
I am running recon-all for several subjects’ 7T data using Freesurfer version
6.0 and currently trying to ensure appropriate skull stripping and pial/wm
surface generation. For a few participants that needed some control points
added and for which I reran them through the –autorecon2-cp
Hello,
Are the contents of the *.coords.mean.txt file generated from the trac-all
-stat command, the average MNI coordinates along the tract across subjects? Or
average coordinates in native space?
Thanks!
Carissa
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roblem.
Can you upload a zip file with this subject's entire TRACULA subject dir for me
here: https://gate.nmr.mgh.harvard.edu/filedrop2/
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Carissa Nicole Weis
<
rd.edu/filedrop2/
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
on behalf of Carissa Nicole Weis <cnw...@uw
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Carissa Nicole Weis
<cnw...@uwm.edu>
Sent: Thursday, January 11, 2018 4:55:47 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] TRACULA path segmentation fault error be
Hello all,
I've been running trac-all from the command line without the configuration file
since I'm not changing any defaults. I've successfully run several subjects
through the trac-all -prep stage, and the -bedp stage. **Although I never got
the "trac-all -bedp finished without error"