Dear freesurfers,
This is the first time I am posting so hope the following makes sense, I don't
use freesurfer but manage the installation of freesurfer on our cluster.
We have a user who is trying run a script that submits a recon-all job to our
cluster using the -localGI flag:
recon-all -su
: Charnjit Sidhu; Freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] localgi make_outer_surface
Hi Charnjit, that script is Maria's code I think (which is why it is a
good idea to post to the list and not to us personally :-)
doug
On 03/21/2014 07:28 AM, Charnjit Sidhu wrote:
> Hi Dou
Hi,
Does anyone know how matlab is called in the localgi process.
My script fails during the make_outer_circle process, I need to export some
variables before Matlab is called to enable it to work on our cluster (i.e
different matlab path, userid) . How can I change the way matlab is called?
T
ed the relevant scripts and output.
Can you help me.
Thanks
Charnjit
From: Marie Schaer [marie.sch...@unige.ch]
Sent: 02 April 2014 12:45
To: Freesurfer support list
Cc: Charnjit Sidhu
Subject: Re: [Freesurfer] localgi make_outer_circle
Hi Charnjit
