Dear Eugenio,
Using full path solved the problem, thank you very much!
Best Regards
Cong
> From: "Iglesias Gonzalez, Eugenio"
> Subject: Re: [Freesurfer] error in segmentHA_T2.sh
> To: Freesurfer support list
> Message-ID: <2706b24c-1442-46b9-8a8b-15492520b...@
, and this T2.nii file works well in
6.0.0 version for segmenting hippocampal subregion. I pasted the wrong scripts,
could you tell me what’s wrong? Thanks!
Best Regards
Cong
BrainwaverdeMacBook-Pro:subjects Brainwaver$ segmentHA_T2.sh control004
control004/mri/T2.nii T2 1
having same coordinate
with T1?
Regards
Cong
>
> From: Douglas Greve
>
>
> no idea. you'll proably have to contact the MRIcro group
>
>
> On 5/16/17 8:28 AM, Cong wrote:
>> Dear FSers
>>I extracted left thalamus as ROI volume from aseg.mgz by this
Dear FSers
I extracted left thalamus as ROI volume from aseg.mgz by this command:
mri_binarize --i control001/mri/aseg.mgz --match 10 --o
control001/roi/l_thal.nii
I overlaid l_thal.nii to control001.nii in MRIcro software in a Macbook and
it looks well.
However, when I overlai
time. Thanks very much.
Best Wishes
Cong Chen
> Date: Mon, 24 Oct 2016 23:22:58 -0400
> From: Bruce Fischl
>
>
> Can you send us specific coordinates of things to look at?
>
>> On Oct 24, 2016, at 10:44 PM, Cong <3110103...@zju.edu.cn> wrote:
>>
>
Hi Dear Bruce
I have uploaded a subject named Cong2Bruce.zip through ftp. I can’t fix
it by myself. Could you help me how to use expert options to get correct white
matter and gray matter surface. Thank you very much.
Best Wished
Cong Chen
> Date: Tue, 20 Sep 2016 10:45:30 -0400 (
ng2Bruce.zip
229 Entering Extended Passive Mode (|||37856|).
553 Could not create file.
ftp>
Best Wishes
Cong Chen
> Date: Mon, 17 Oct 2016 23:16:52 -0400
> From: Bruce Fischl
>
> Try changing dir into the source directory then do the put with only the file
> name and no path
&
Hi Z K
The contents of build-stamp.txt are
freesurfer-Darwin-lion-stable-pub-v5.3.0.
Best Wishes
Cong Chen
> Date: Tue, 18 Oct 2016 11:09:20 -0400
> From: Z K
>
>
> Hello,
>
> Can you provide me with the contents of your
> /Applications/freesurfer/build-stamp
Dear freesufer experts I’m learning DTI image process according to steps in FsTutorial/ Diffusion_DtiIntegration. In Spatial Normalization I need create a .m3z morph file through mir_cvs_register. I used command mri_cvs_register --mov subjectname --template cvs_avg35. But it always stop for mri
Hi Bruce
full session is listed. Thank you very much.
Best Wishes
Cong
BrainwaverdeMacBook-Pro:~ Brainwaver$ ftp surfer.nmr.mgh.harvard.edu
Connected to surfer.nmr.mgh.harvard.edu.
220-This is the Martinos Center Anonymous FTP service. Use of this site
220-shows implicit
. 553 Could not
create file”. Could you give me some advices?
Best Wishes
Cong Chen___
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Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only
ways appear an error
> called "550 Failed to change directory", so I send a subject to you through
> FileDrop. Can you receive a file named Cong2Bruce.zip?
> Thanks again for your help.
>
> Best Wishes
> Cong Chen
>> Date: Thu, 8 Sep 2016 10
t.
> I failed to upload subject through ftp, it's always appear an error
> called "553 Could not create file", so I send a subject to you through
> FileDrop. Can you receive a file named Cong2Bruce.zip?
> Thanks again for your help.
>
> Best Wishes
&g
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