Re: [Freesurfer] Pet Surfer

2018-10-10 Thread David.Mackarthy
ctures (including WM and CSF). For > map-based, we use MG. MG removes WM (and CSF) entirely. In theory, it > can be run in a way to keep WM and throw GM and CSF away, but that is > not implemented. Does this answer your questions? > > On 10/10/2018 07:31 AM, David.Mackarthy wrote: > &

[Freesurfer] Pet Surfer

2018-10-10 Thread David.Mackarthy
External Email - Use Caution Dear Dr Greeve, I am following petsurfer pipeline to do surface based analysis of PET-FDG data and I have interest in doing partial volume correction. I would like to inquire about: 1) Can partial volume correction be applied on white mater, or just

[Freesurfer] Convert mgh to gii

2018-08-24 Thread David.Mackarthy
External Email - Use Caution Hi FS experts, I ran surface based analysis between two groups. The final output "is cache.th13.pos.sig.cluster.mgh" I would like to convert this file to gii format using "mris_convert" I tried: mris_convert -c cache.th13.pos.sig.cluster.mgh