Re: [Freesurfer] mri_glmfit-sim with grf (ERROR: need --csd with --csd-out)

2021 às 03:14, Diógenes Bispo < diogenesdi...@gmail.com> escreveu: > Hi Freesurfer team. > > I made the following command: > > #!/bin/tcsh > setenv study $argv[1] > foreach hemi (lh rh) > foreach smoothing (10) > foreach meas (volume) > mr

[Freesurfer] mri_glmfit-sim with grf (ERROR: need --csd with --csd-out)

--fwhm 13.965488 --hemi rh --subject fsaverage --thmin 2.0 --sign neg --oannot rh.volume.covid.10.glmdir/Contrast-1_group.diff/grf.th2.0.neg.sig.ocn.annot --bonferroni 2 --surf white ERROR: need --csd with --csd-out How should I proceed to solve this problem? Thanks Diógenes Bispo diogenesdi

[Freesurfer] How to use atlas AAL3 label on Freesurfer?

External Email - Use Caution Hi Freesurfer team I would like to know how I convert an AAL3 atlas label to the standard Freesurfer space. In addition, I would like to extract volume and cortical thickness from the subjects in this region of interest. I am using Freesurfer version

Re: [Freesurfer] Piriform gyrus and other regions of the olfactory pathway

External Email - Use Caution Dear, Can I use Freesurfer to convert aal atlas 3 from the MNI space to the native space of the T1 sequence? Thanks. Diógenes Bispo Neuroradiologist diogenesdi...@gmail.com Em sáb., 29 de ago. de 2020 às 12:22, Fischl, Bruce escreveu: >

[Freesurfer] Piriform gyrus and other regions of the olfactory pathway

External Email - Use Caution Dear, I would like to know how do I get thickness and cortical volume measurements of the piriform gyrus in Freesurfer version 7, as well as other regions of the olfactory pathway. Thanks. Diógenes Bispo Neuroradiologist diogenesdi...@gmail.com

[Freesurfer] Error message when using mri_glmfit-sim "ERROR: could not open .csd"

or help me to figure out what I'm doing wrong. Thank you! Diógenes Bispo diogenesdi...@gmail.com ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer