External Email - Use Caution
Dear experts,
To perform a Monte Carlo based cluster correction, I have run the following
line:
mri_glmfit-sim --glmdir glmdir --mczsim 3 abs --cwp 0.05 --2spaces --a2009s
I need to figure out which is the minimum number of voxels required for a
ou get that working I think fscalc should do the trick
> > (or it would be easy to do in matlab).
> >
> > cheers
> > Bruce
> > On Fri, 13 Jul 2018, Elisa Castaldi wrote:
> >
> >>
> >> External Email - Use Caution
> >>
> >&
External Email - Use Caution
Dear experts,
I would like to show the across-subject overlap of voxels by creating a map
with color coding indicating the number of subjects activating
corresponding voxels.
For each subject I have run the first level model in spss and saved the
1000
ooks like it is a scripting problem where you did not include a
> backslash to indicate that the command line continued to the next line and
> so it thinks that "-=-iv" is a command (I assume that "commande
> introuvable" means something like "command not found"
reated the lh.con.mris_preproc.log file
Any idea?
Thanks
On 7 November 2017 at 17:00, Douglas N Greve <gr...@nmr.mgh.harvard.edu>
wrote:
> looks like you did not create the lta file properly. You can just pass
> mris_preproc the .dat file instead of the lta.
>
>
> On 11/07/2017 10:
Yes, the output is in native functional space.
On 7 November 2017 at 16:40, Douglas N Greve <gr...@nmr.mgh.harvard.edu>
wrote:
> Did you keep the spm output in native functional space?
>
>
> On 11/07/2017 09:23 AM, Elisa Castaldi wrote:
> > Yes,
> > this is what I h
you look in SUBJECTS_DIR, you should see fsaverage and all the
> subjects being passed to mris_preproc. If not, you need to move them (or
> sym link them) into that folder.
>
> On 11/7/17 6:07 AM, Elisa Castaldi wrote:
>
> Thanks for your answer.
> If I don't specify the directory I g
h
>
>
> On 11/06/2017 01:27 PM, Elisa Castaldi wrote:
> > Dear Freesurfer users,
> >
> > I would like to perform surface based fMRI gorup analysis in
> > Freesurfer starting from SPM first level output files, but I am not
> > succeding.
> > I have alre
Dear Freesurfer users,
I would like to perform surface based fMRI gorup analysis in Freesurfer
starting from SPM first level output files, but I am not succeding.
I have already preprocessed the data in spm and used Freesurfer for
boundary based registration, I have succesfully ran the recon -all
