[Freesurfer] subcortical mask to MNI152 space

2011-06-07 Thread Elisa Golfinopoulos
are in MNI space and the registration of the original MNI 305 subcortical mask with the MNI152 template looks more accurate than the 152 normalized mask. Any help that you can offer would be greatly appreciated. Cheers, Elisa -- Elisa Golfinopoulos Speech Laboratory Cognitive and Neural Systems

Re: [Freesurfer] mri_surfcluster and the color table

2011-05-11 Thread Elisa Golfinopoulos
was read in correctly and the labels were generated in the cluster table. Cheers, Elisa On Wed, May 11, 2011 at 1:02 PM, Elisa Golfinopoulos wrote: > Hi all, > > I wanted to follow-up on my previous e-mail, which may have been a bit too > vague. > > I am using the command: > &

Re: [Freesurfer] mri_surfcluster and the color table

2011-05-11 Thread Elisa Golfinopoulos
le or set the color table information externally so mri_surfcluster knows which label corresponds with each id? Any suggestions would be greatly appreciated. Thanks so much for your help. Cheers, Elisa P.S.: I am using the 5th version of Freesurfer for a 64 bit machine. On Mon, May 2, 2011 at 5:3

[Freesurfer] mri_surfcluster and the color table

2011-05-02 Thread Elisa Golfinopoulos
to have a --ctab or --colortable argument. Is there a way to set the color table as an environment variable and would this be an appropriate workaround or is it the case that the color table is a fixed setting for mri_surfcluster? Your help is greatly appreciated. Cheers, Elisa -- Elisa Golfinopou