[Freesurfer] visualization, heatmap

External Email - Use Caution Dear Freesurfer team, I noticed that some studies/publications add figures with heatmaps to visualize the significant cortical results (after correction), others do not. We tried to use the heat map (from yellow/red to dark blue/light blue) to visuali

[Freesurfer] extracting values from signifciant clusters

visualize the individual values/changes. I am wondering how I can do that? Please let me know if you need any more information. Thank you for your answer in advance! All the best, Eszter Boros ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https

[Freesurfer] missing values, aseg

volume.txt Thank you for your help in advance! And let me know if you need any more information. All the best, Eszter Boros ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information

[Freesurfer] somatosensory cortex (S1)

at the postcentral gyrus and sulcus, but I am specifically interested in the face area. Is there a way to make my analysis more accurate? I am using Freesufer 7.1.1 Thank you for your answer! I greatly appreciate it. All the best, Eszter Boros

[Freesurfer] ROI analysis, S1, face area

at the postcentral gyrus and sulcus, but I am specifically interested in the face area. Is there a way to make my analysis more accurate? I am using Freesufer 7.1.1 Thank you for your answer! I greatly appreciate it. All the best, Eszter Boros

Re: [Freesurfer] using T2 for recon-all

with a different scanner using Freesurfer? (e.g., measuring cortical thickness) All the best, Eszter Boros Douglas N. Greve ezt írta (időpont: 2022. febr. 14., H, 10:48): > You will definitely get systematic differences between using T2 and not, > so you could have a false positive (or ne

[Freesurfer] using T2 for recon-all

should not be a problem? I am using Freesufer 7.1.1 Thank you for your answer! I greatly appreciate it. All the best, Eszter Boros ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] longitudinal analysis – Is correcting the Base enough?

Did I get this right? This could save a huge amount of time since I should edit one image (Base) instead of two (Cross images). I am using Freesurefer 7.1.1. Thank you for your answer! I greatly appreciate it. All the best, Eszter Boros ___ Freesurfer ma

Re: [Freesurfer] Base correction, longitudinal analysis

tried again with a different subject. All the best, Eszter Boros Douglas N. Greve ezt írta (időpont: 2021. aug. 18., Sze, 22:06): > That command will re-run the base, but it should respect your edits. Is > that not the case? If you just want to re-run part of it, you can specify > the

Re: [Freesurfer] Base correction, longitudinal analysis

d MR2. My question is how can I regenerate the corrected Base? What command should I use? Thank you so much! All the best, Eszter Boros Eszter Boros ezt írta (időpont: 2021. aug. 8., V, 19:04): > Dear FreeSurfer Team, > > I am working on a longitudinal pipeline and after corre

[Freesurfer] Fwd: Base correction, longitudinal analysis

so much! All the best, Eszter Boros ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer