[Freesurfer] Error in Analyze: Couldn't open PATH/sub_01/surf/lh.thickness.fwhm10.fsaverage.mgz or .mgh file.

2021-09-21 Thread Fabiola Macruz
External Email - Use Caution Dear FreeSurfer experts: I am processing in qdec 25 subjects (each with 3 MRIs studies) and I have this terminal output: Error in Analyze: Couldn't open PATH/sub_01/surf/lh.thickness.fwhm10.fsaverage.mgz or .mgh file. I have executed the following

[Freesurfer] QDEC command not found

2021-09-21 Thread Fabiola Macruz
External Email - Use Caution Dear freesurfer experts, I have installed the freesurfer version 7.1.1 in my computer (Mac). After running the longitudinal pipeline in all the patients, I tried to open qdec for the analysis by typing qdec and the answer is "command not found".

[Freesurfer] Total Brain volume normalization

2021-09-01 Thread Fabiola Macruz
External Email - Use Caution Hello Free Surfer developers, >From my understanding, the volumes provided in the aseg.stats document is not >corrected by the head size. In order to do that, it is recommended to use the ITV and the label ID's: mri_label_volume -eTIV \ $sdir/transf