Re: [Freesurfer] recon-all clinical : usage with contrast-enhanced T1-weighted images?

2024-06-13 Thread Gopinath, Karthik
Hi Barbara, Yes, you can use recon-all-clinical for the enhanced T1. But, the surface reconstruction might fail and in that case, you might have to try running SynthSR + recon-all. Thank you, Karthik On Jun 13, 2024, at 1:30 AM, Barbara Bellenberg wrote: External Email - Use Caution

Re: [Freesurfer] editing segmentations from recon-all-clinical

2024-04-19 Thread Gopinath, Karthik
Hello Agata, From my limited knowledge, it is not possible to update the segmentations and re-run the recons at this point. Karthik On Apr 5, 2024, at 10:31 AM, Agata Wolna wrote: External Email - Use Caution Hi! I have a question regarding the recon-all-clinical pipeline: is it

Re: [Freesurfer] WM Hypointensities

2023-07-20 Thread Gopinath, Karthik
alf Of Huang, Yujing Sent: Thursday, July 20, 2023 9:38 AM To: Freesurfer support list mailto:freesurfer@nmr.mgh.harvard.edu>> Cc: Gopinath, Karthik mailto:kgopin...@mgh.harvard.edu>>; Iglesias Gonzalez, Juan E. mailto:jiglesiasgonza...@mgh.harvard.edu>> Subject: Re: [