Re: [Freesurfer] Cortical thickness difference as vertex-label overlay

2021-09-21 Thread Graterol Pérez , José Alberto
] Cortical thickness difference as vertex-label overlay Try mri_mask yourcontrast/gamma.mgh sig.masked.mgh yourcontrast/gamma.masked.mgh gamma is the contrast value (eg, patients minus controls). Is that what you wnat? On 9/10/2021 6:20 AM, Graterol Pérez, José Alberto wrote: External Email

[Freesurfer] Cortical thickness difference as vertex-label overlay

2021-09-10 Thread Graterol Pérez , José Alberto
External Email - Use Caution Hello, I've done a group comparison between patients and controls, and obtained some significant cortical thickness (CT) clusters. Is there a way to obtain an overlay similar to the sig.masked, but for the vertex-wise CT values instead of the p val

Re: [Freesurfer] White matter parcellation

2021-02-03 Thread Graterol Pérez , José Alberto
, Graterol Pérez, José Alberto wrote: External Email - Use Caution Dear FreeSurfer experts, I need help trying to understand how the white matter gets parcellated. I have a clinical dataset, which means that the resolution is not as research images, but it ran without a problem. I would like to

[Freesurfer] White matter Parcellation

2021-02-01 Thread Graterol Pérez , José Alberto
External Email - Use Caution Dear FreeSurfer experts, I need help trying to understand how the white matter gets parcellated. I have a clinical dataset, which means that the resolution is not as research images, but it ran without a problem. I would like to measure the volume of