create?
On 4/6/2021 7:53 PM, Harkey, Thomas Jarrott wrote:
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Douglas,
Thanks again. Is this value in the brainstem.dat file accurate or is it subject
to the same limitation in that the value will depend on the field of view of
volume acquisition?
In other words
to obtain total
brain volume?
Kind regards,
Thomas Harkey
UAMS College of Medicine M3
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Harkey, Thomas Jarrott
Sent: Tuesday, March 30, 2021 6:03 PM
To: Freesurfer support list
Subject: Re: [Freesurfer
scan that only covers 25mm of the brain inferior-superior.
This is not whole brain coverage, which is causing the problem
On 3/25/2021 9:07 PM, Harkey, Thomas Jarrott wrote:
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Douglas,
Thank you for your help. I have pasted the result below.
Volume information
. For starters, the voxel size
looks huge. Run
mri_info subject/mri/orig/001.mgz
and send the result
On 3/23/2021 10:54 PM, Harkey, Thomas Jarrott wrote:
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Hello,
My name is Thomas Harkey and I am conducting research using FreeSurfer. After
running recon-all
will take a few hours
On 8/23/2020 7:35 PM, Harkey, Thomas Jarrott wrote:
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Ok, I tried that command and it didn’t work because aseg.presurf.mgz doesn’t
exist in that directory
I don’t think that file was generated with autorecon1.
So do you think I need to run
y-To: Freesurfer support list
Date: Monday, August 24, 2020 at 9:14 AM
To: "freesurfer@nmr.mgh.harvard.edu"
Subject: Re: [Freesurfer] BrainSegNotVent {Disarmed}
No, you need a segmentation
On 8/23/2020 8:18 PM, Harkey, Thomas Jarrott wrote:
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you using v7? If so, look in subject/stats/brainvol.stats
On 8/22/2020 5:39 PM, Harkey, Thomas Jarrott wrote:
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Hello,
I am a student learning free surfer. I was able to obtain intracranial volume
by running
recon-all –i file.dcm –subject bert –autoreco
ts like
mri_segstats --seg subject/mri/aseg.presurf.mgz --ctab-default --sum
subject/stats/aseg.presurf.stats
Then add up all the segmentations you want to get BrainSegNotVent
On 8/23/2020 11:42 AM, Douglas N. Greve wrote:
Are you using v7? If so, look in subject/stats/brainvol.stats
On 8/22/20
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Hello,
I am a student learning free surfer. I was able to obtain intracranial volume
by running
recon-all –i file.dcm –subject bert –autorecon1
and then
mri_segstats --subject bert --etiv-only
How can I obtain the BrainSegNotVent volume? I
