[Freesurfer] trouble importing SPM2/Analyze file with tkregister2 in order to create a register.dat file

2006-06-05 Thread Istvan Akos Morocz
dear freesurfer team, i experience trouble to compute the register.dat file when using tkregister2 to import an SPM2 BOLD brain volume f.img together with an 001.mgz structural file. segmentation and flattening worked flawlessly for that 001.mgz file (imported initially from an SPM2 anatomical d

[Freesurfer] freesurfer and monkey (macaque) brain processing

2006-06-06 Thread Istvan Akos Morocz
dear freesurfer group, is there anywhere some cookbook-like instruction for processing monkey (macaque) brain MRI data with FreeSurfer ? are there any normalized macaque brain templates needed for FreeSurfer ? thanks, bye, pisti - [EMAIL PROTECTED] ___

[Freesurfer] freesurfer & nohup

2007-04-02 Thread Istvan Akos Morocz
does anybody know if FreeSurfer can be run in combination with the unix command 'nohup' like: nohup recon-all -autorecon-all -subjid fs & so that one is able to logout after beginning of the process without halting all computation ? thanks, bye, pisti - [EMAIL PROTECTED] _

Re: [Freesurfer] freesurfer & nohup

2007-04-02 Thread Istvan Akos Morocz
but I don't know the details of those problems. Nick On Mon, 2007-04-02 at 16:05 -0400, Istvan Akos Morocz wrote: does anybody know if FreeSurfer can be run in combination with the unix command 'nohup' like: nohup recon-all -autorecon-all -subjid fs & so that one is able

Re: [Freesurfer] Recommended Linux flavour

2007-04-06 Thread Istvan Akos Morocz
freesurfer works fine on Slackware too, v11.0 and v10.1, using Xeon chips. bye, pisti Date: Thu, 05 Apr 2007 13:08:46 -0400 From: Nick Schmansky <[EMAIL PROTECTED]> Subject: Re: [Freesurfer] Recommended Linux flavour To: [EMAIL PROTECTED] Cc: Freesurfer Mailing List Message-ID: <[EMAIL PROTEC

[Freesurfer] color codes for imported data

2007-04-23 Thread Istvan Akos Morocz
dear freesurfers, could plase anybody advice me how to import with tksurfer correctly SPM5 activation maps so that color coding of the superimposed blobs look satisfying? what i am missing i think is a more complete documentation about tksurfer's run options such as -fthresh -fmid -foffset and -

[Freesurfer] how to import private color scales

2007-06-04 Thread Istvan Akos Morocz
dear freesurfers, how do i import my own 'private' colorscales, i.e., colormaps for the overlay data ? something richer in colors than 'heat' ? what's the format and size for such a file? thanks, bye, pisti - [EMAIL PROTECTED] ___ Free