Re: [Freesurfer] recon-all 7.1.1 {Disarmed}

External Email - Use Caution Hi I think i fixed it--just needed to add to PATH correctly in .zprofile Cheers James On Fri, Nov 27, 2020 at 11:16 AM James Hartzell wrote: > Hi Andrew > Hope you're well and safe from Covid. > I've got another problem I hop

Re: [Freesurfer] recon-all 7.1.1 {Disarmed}

or directory Cheers James On Tue, Sep 22, 2020 at 8:40 PM James Hartzell wrote: > Okay, great, thanks Andrew. > I can't think of how (otherwise) I might have known not to do that! > Cheers > James > > On Tue, Sep 22, 2020 at 8:29 PM Hoopes, Andrew > wrote: > >

Re: [Freesurfer] recon-all 7.1.1

o > your default DYLD_LIBRARY_PATH will most likely mess up freesurfer binaries > in your environment. > > Andrew > > > > *From: *James Hartzell > *Date: *Tuesday, September 22, 2020 at 2:19 PM > *To: *"Hoopes, Andrew" > *Cc: *FS Help > *Subject: *Re:

Re: [Freesurfer] recon-all 7.1.1

maci64: > > (Sep 21, 2020 16:41:29) Exiting with status 0 > (Sep 21, 2020 16:41:29) End - Successful. > Finished > mv: rename > /var/folders/kl/72rg80dd57ncd7nc638fwzmhgn/T/tmp.0al9EPfQ/install-target/v84 > to /Applications/freesurfer/7.1.1/MCRv84: Permission denied >

Re: [Freesurfer] recon-all 7.1.1

inished mv: rename /var/folders/kl/72rg80dd57ncd7nc638fwzmhgn/T/tmp.0al9EPfQ/install-target/v84 to /Applications/freesurfer/7.1.1/MCRv84: Permission denied Also, if you could provide guidance for the append step, that would be great. Cheers James On Sat, Sep 19, 2020 at 4:17 PM James Hartz

Re: [Freesurfer] recon-all 7.1.1

ii.gz -autorecon1 zsh: permission denied: recon-all zsh: permission denied: recon-all zsh: command not found: zsh: Cheers James On Sat, Sep 19, 2020 at 5:03 PM James Hartzell wrote: > Hi Andrew > > Thanks, cool, that looks like it worked. I'll run recon-all, check the > logs an

Re: [Freesurfer] recon-all 7.1.1

; > Try cd`ing to your home directory, then running: > > > > curl > https://raw.githubusercontent.com/freesurfer/freesurfer/fs-7.1/scripts/recon-all > > recon-all > > sudo mv recon-all $FREESURFER_HOME/bin > > > > best > > Andrew > > > > *Fr

[Freesurfer] recon-all 7.1.1

://raw.githubusercontent.com/freesurfer/freesurfer/fs-7.1/scripts/recon-all > recon-all zsh: permission denied: recon-all Here's hoping you can send another fix! Cheers James -- James Hartzell, PhD (2x) Donostia-San Sebatián, Spain Center for Mind/Brain Sciences (CIMeC), The University of Trento, Italy Ce

[Freesurfer] autorecon2, error MRISreadCurvature:

lh.curv does exist in the subject's surf folder. I ran it twice just to be sure. I don't find an answer for the problem in the freesurfer list. Any guidance will be much appreciated! Cheers James Hartzell, PhD (2x) Donostia-San Sebatián, Spain

[Freesurfer] Brainhack Donosti 2018, San Sebastián, Spain

ality assessment of DWI data Preprocessing data Find your path: tractography and group analysis -- James Hartzell, PhD Basque Center on Cognition, Brain and Language (BCBL), Donostia, Spain Center for Mind/Brain Sciences (CIMeC), The University of Trento, Italy Center

[Freesurfer] Abstract submission deadline extended - 1st International Workshop on Predictive Processing

://www.bcbl.eu/events/prediction-2018/en/ We look forward to seeing you at the conference. Yours sincerely, The Organizing Committee Manuel Carreiras, Clara Martin, Nicola Molinaro & David Soto -- James Hartzell, PhD Basque Center on Cognition, Brain and Language (BCBL), Donostia, Spain Ce