Hi Bruce, Thanks so much for your response. I can only start Matlab from the terminal when I use the following command within the Matlab applications folder:
./matlab Am I to understand that the matlab command must be globally accessible? If so, how might I achieve that? Thanks so much, Jason On Wed, Oct 28, 2015 at 8:39 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Jason > > do you have matlab installed? If so, you need to setup your environment so > that it is in your path. This doesn't really have anything to do with > FreeSurfer - you need to be able to type "matlab" from the command line and > have it find the binary > > cheers > Bruce > On Wed, 28 Oct 2015, Jason Haberman wrote: > > Dear Freesurfer Community, >> I am very new to Freesurfer and am trying to work my way through the >> tutorial. I am currently stuck at the >> mkcontrast-sess -analysis my-workmem.sm05.lh -contrast encode-v-base -a 1 >> section, having received the error: >> ERROR: cannot find matlab. Is it in your path? >> >> I have searched the forums and found one instance of this being reported, >> but the suggested solutions did not resolve the problem. Is there anyway >> further recommendations you might make? >> >> I have attached a screenshot of my .bash_profile and of my attempts to run >> mkcontrast. I would be most grateful for any assistance you might offer. >> >> Warm Regards, >> Jason >> >> Inline image 1 >> >> -- >> >> Jason Haberman >> Assistant Professor of Psychology >> Rhodes College >> Clough Hall 119 >> 901-843-3231 >> http://jasonmarchaberman.wordpress.com/ >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- Jason Haberman Assistant Professor of Psychology Rhodes College Clough Hall 119 901-843-3231 http://jasonmarchaberman.wordpress.com/
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