Re: [Freesurfer] Recon-all with/without T2 give the same stats

2018-10-11 Thread Jianzhong Chen
s a bug in 5.3. Try running recon-all like > recon-all -s subject -parcstats -parcstats2 -parcstats3 > to regenerate the stats files > > On 10/09/2018 11:19 PM, Jianzhong Chen wrote: > > > > External Email - Use Caution > > > > They are different. I a

Re: [Freesurfer] Recon-all with/without T2 give the same stats

2018-10-08 Thread Jianzhong Chen
ame since that does not make reference to > the surfaces. The aparc stats should have been different because the > thickness should have been different. Can you check whether the thickness > files are different? > > On 10/8/18 9:39 AM, Jianzhong Chen wrote: > > External Em

[Freesurfer] Recon-all with/without T2 give the same stats

2018-10-08 Thread Jianzhong Chen
External Email - Use Caution Dear All, I tried recon-all with/without T2 image using FS 5.3.0. Then I found that the aseg stats and aparc stats with/without T2 are exactly the same. When I check the pial surfaces, I can see that they are very similar but not the same. So is it rea