Re: [Freesurfer] mri_convert

2012-02-24 Thread Jimmy Ghaziri
e (e.g., upside-down). FSLVIEW does display little > letters along the side of the image to indicate what it thinks the > orientation is, so if you stick to those, then you can properly judge > whether the orientation is correct. > > > > > > Jimmy Ghaziri wrote: > >>

Re: [Freesurfer] mri_convert

2012-02-27 Thread Jimmy Ghaziri
fer/**subjects/pre_al_t1/mri/aparc+ > **aseg.mgz --temp ~/Documents/freesurfer/**subjects/pre_al_t1/mri/aparc+* > *aseg.mgz --o > ~/Documents/freesurfer/**subjects/pre_al_t1/mri/aparc+**aseg_t1ref.mgz > --regheader ~/Documents/freesurfer/**subjects/pre_al_t1/mri/aparc+** > aseg.mgz > >

[Freesurfer] recon2 error

2012-03-07 Thread Jimmy Ghaziri
Dear FreeSurfer community, I am running Ubuntu 11.10 on an Intel i7 970 3.20Ghz 64bit (11 CPUs) with 12GB DDR3 RAM on a 120GB raid 0 solid state hard drives. I have ran recon-all this summer on some of my subjects and it worked perfectly in 13 hours. I'm trying to run one more analyse (a recon-al

Re: [Freesurfer] recon2 error

2012-03-07 Thread Jimmy Ghaziri
ional one. How long did you > wait? Are you sure it is not going to terminate if you let it run long > enough? > > cheers > Bruce > > On Wed, 7 Mar 2012, Jimmy Ghaziri wrote: > > Dear FreeSurfer community, >> >> I am running Ubuntu 11.10 on an Intel i7 970 3.2