[Freesurfer] Tksurfer overlay custom color look up table

Hello everyone is there a way to display an overlay in tksurfer with a clut other than the three available from the gui? Thanks a lot in advance. - Julien ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailma

[Freesurfer] Water threshold for skull strip : 1% is still too high

Hi all I can't get freesurfer to strip the skull properly, even with a water threshold of 1%. There is still so much skull (csf) remaining that a manual edit is not doable. Is there a way to preprocess the anatomical scan to correct this? ( I tried a water threshold of 0% although I'm not sure tha

[Freesurfer] Automated subcortical labeling : what is the RB_all_2006-2-15 atlas?

Hi freesurfer developers I'm working with freesurfer's subcortical anatomical labels. I understand that they are based on a database of manually labeled anatomical scans, which were normalized to the MNI template in order to get probability maps, that freesurfer uses as prior information. In a sli

[Freesurfer] register.dat

slated an image by hand before coregistration, for example)? Thank you very much in advance - Julien Dubois ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] Remote display problems

Dear freesurfer list I know similar problems have arisen before and I have read the archives. e.g. http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg07545.html http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg07324.html however I'm still not sure how to solve my problem s

Re: [Freesurfer] Autoredraw

so, what I'd like to be able to do when I'm working remotely and each redraw takes ~10-15s, is: load everything I need (curvature, labels, change label colors, overlays, ...) and only redraw once when everything I want is on the picture. some superfluous redraws in any case: - when I click right t

Re: [Freesurfer] Autoredraw

the server? > > cheers, > Bruce > > > On Sat, 19 Apr 2008, Julien Dubois wrote: > > > > > > > > > > Hi > > > > I'm working on tksurfer installed on a server and therefore it takes > > time to display the whole volume each time I draw

[Freesurfer] Autoredraw

view menu but that doesn't do much. Thank you. - Julien Dubois ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer