Re: [Freesurfer] recon-all after n4 correction

2018-11-26 Thread Kathryn Fitzgerald
External Email - Use Caution thank you for your quick response - I will! On Mon, Nov 26, 2018 at 1:12 PM Bruce Fischl wrote: > Hi Katie > > I think that should be ok, but of course the only way to know for sure is > to try! > > cheers > Bruce > > O

[Freesurfer] recon-all after n4 correction

2018-11-26 Thread Kathryn Fitzgerald
External Email - Use Caution Dear FS experts, I was wondering if it is possible to run recon-all (e.g. autorecon2, autorecon3) on skull-stripped images which have gone through N4 correction. Would it be okay to run? recon-all -i sub1.nii.gz -subjid s1 -autorecon1 -sd .