[Freesurfer] Recon1 command

2020-11-07 Thread Kelli Ann Nini
External Email - Use Caution Greetings, esteemed Surfers! I have a .nii file that I am trying to run through recon1 and I'm not sure I have my commands correct. At first I typed this command line and received this error: recon-all -subjid 1234 -i 1234.nii -autorecon1 ERROR: You

Re: [Freesurfer] Recon1 command {Disarmed}

2020-11-10 Thread Kelli Ann Nini
ing like: mv /home/blah/blah/blah/1234 /home/blah/blah/blah/saved.1234 recon-all -subjid 1234 -i 1234.nii -autorecon1 and see if that works (then you can probably delete the saved.1234 dir if you want) cheers Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Kelli Ann Nini

[Freesurfer] Trying to highlight insula

2021-04-25 Thread Kelli Ann Nini
External Email - Use Caution Greetings esteemed surfers, I am trying to take an image of the insula using the LUT. I've loaded volumes T1, wm, brainmask, and aseg respectively, and checked all three views but for some reason labels 19 and 55 (Left & Right Insula) "does not exist