External Email - Use Caution
Dear Freesurfer experts,
After running the recon-all in one of my subjets, part of the temporal
lobe was partially excluded. Then, I tried to use the watershed
algorithm to be less agressive in the skull stripping
as follows:
recon-all -skullstrip -ws
External Email - Use Caution
External Email - Use Caution
Dear Freesurfeer experts,
After running the recon-all in one of my subjets, part of the temporal
lobe was partially excluded. Then, I tried to use the watershed
algorithm to be less agressive in the skull stripping
External Email - Use Caution
Dear Freesurfer experts,
I have compared the PVC uptake values of gtm.stats with the values of
gtm.nii.gz with the function load_nii in matlab. I noted
that values in matlab are reversed, i. e., the first value in
gtm.stats matches with the last value
External Email - Use Caution
Dear Freesurfeer experts,
After running the recon-all in one of my subjets, part of the temporal
lobe was partially excluded. Then, I tried to use the watershed
algorithm to be less agressive in the skull stripping
as follows:
recon-all -skullstrip -w
edu>) escribió:
> You can try running gtmseg. You will not want its final output, but along
> the way it will produce a file called apas+head.mgz, and this will have a
> semi-good segmentation of extracerebral CSF.
>
>
> On 7/12/2019 12:14 PM, Laboratorio de Neur
External Email - Use Caution
Dear Freesurfer experts,
Is there any way to obtain a CSF mask in Freesurfer similar to that
obtained with the SPM segmentation (see attached file)? I would need
that the CSF mask contains not only the cerebral ventricles but also
the extracerebral CSF
.
Best,
Jose
El mar., 12 mar. 2019 a las 18:17, Laboratorio de Neurociencia Funcional (<
neuroaging...@gmail.com>) escribió:
> I just want to use some labels contained in the aparc+aseg.mgz and the
> aparc.a2009s+aseg.mgz files to build an anatomical template that can be
> used
;
> > Hi Jose
> >
> > can you clarify what you mean by "...to get all the labels that are
> > obtained in each individual subject." You almost certainly don't
> > need to
> > recon fsaverage to do this, but I&#
uce
>
>
> On Tue, 12
> Mar 2019, Laboratorio de Neurociencia Funcional wrote:
>
> >
> > External Email - Use Caution
> >
> > Dear Freesurfers,
> >
> > I would like to apply recon-all to the fsaverage subject of my sample to
> get all the
External Email - Use Caution
Dear Freesurfers,
I would like to apply recon-all to the fsaverage subject of my sample to
get all the labels that are obtained in each individual subject. However,
it is not possible because my average subject doesn't contain the file
/orig/001.mgz re
o any possible cortical atrophy.
>
> cheers
> Bruce
>
> On Mon, 18 Feb 2019, Laboratorio de
> Neurociencia Funcional wrote:
>
> >
> > External Email - Use Caution
> >
> > Dear all,
> >
> > I am planning to run separate regression analysis wi
External Email - Use Caution
Dear all,
I am planning to run separate regression analysis with cortical thickness
in two very different populations (young and elderly subjects). Depending
on results, it may happen that I am interested in comparing regression
slopes between the two
t; the aparc as it is based on actual cytoarchitectural landmarks that are
> visible in ex vivo mri.
>
> cheers
> Bruce
>
>
> On Mon,
> 4 Feb 2019, Laboratorio de Neurociencia Funcional wrote:
>
> >
> > External Email - Use Caution
> >
> > Dea
External Email - Use Caution
Dear Freesurfers,
gray matter volume of the entorhinal cortex (EC) can be obtained either in
the ?h.aparc.stats or ?h.BA_exvivo.stats/?h.BA_exvivo.thresh.stats files.
Considering that all our T1 images were manually edited on a slice-by-slice
basis to
; Use rpwang as recipient. Thanks.
> On 1/31/19 11:29 AM, Laboratorio de Neurociencia Funcional wrote:
>
> Please let me know how to send you these files.
>
> El jue., 31 ene. 2019 a las 17:19, Ruopeng Wang (<
> rpw...@nmr.mgh.harvard.edu>) escribió:
>
>> Can you send us
las 15:32, Ruopeng Wang (<
>> rpw...@nmr.mgh.harvard.edu>) escribió:
>>
>>> Your screenshot appears to be from burt data but I assume it was loaded
>>> with similar commands. I could not replicate the displacement with burt
>>> data. Would it be possible
d you about issues installing Freeview, or wrong
interaction between Ubuntu and Freeview. Any suggestion?
El jue., 31 ene. 2019 a las 16:30, Ruopeng Wang ()
escribió:
> That’s unlikely. Did FS 6.0 have the same problem?
>
> On Jan 31, 2019, at 9:59 AM, Laboratorio de Neurociencia Funcional
lh.white file from this
> OSM_0 subject?
>
> Thanks,
> Ruopeng
>
>
> On Jan 31, 2019, at 9:18 AM, Laboratorio de Neurociencia Funcional <
> neuroaging...@gmail.com> wrote:
>
> External Email - Use Caution
>
> Sure, commands are copied below:
>
ang ()
escribió:
> Can you share the freeview command you run to load the these data?
>
> Ruopeng
>
> On Jan 31, 2019, at 7:31 AM, Laboratorio de Neurociencia Funcional <
> neuroaging...@gmail.com> wrote:
>
> External Email - Use Caution
>
> Dear Freesur
19 matches
Mail list logo
