[Freesurfer] Fwd: Qdec Error in analyze: command failed

2012-03-07 Thread Laura Tully
Hi All, Just wanted to follow up on my message below. Thank you! Laura. -- Forwarded message -- From: Laura Tully Date: Mon, Mar 5, 2012 at 2:03 PM Subject: Qdec Error in analyze: command failed To: freesurfer@nmr.mgh.harvard.edu Hi, I'm getting an error in analyze: co

[Freesurfer] Qdec Error in analyze: command failed

2012-03-05 Thread Laura Tully
/lh.thickness.fwhm10.fsaverage.mgh /ncf/snp/04/SCORE/freesurfer_analysis/27216/surf/lh.thickness.fwhm10.fsaverage.mgh /ncf/snp/04/SCORE/freesurfer_analysis/27218/surf/lh.thickness.fwhm10.fsaverage.mgh --o /ncf/snp/04/SCORE/freesurfer_analysis/qdec/lh_thick_10_HC_SocFx&ICV/y.mgh -- Laura T

Re: [Freesurfer] Qdec Error: MatrixMultiply: ml is null!

2012-03-01 Thread Laura Tully
to estimate > missing fields. > doug > > Laura Tully wrote: > >> Hi Nick and Doug, >> Thanks for the help, I'll give the demeaning a try. >> Re: the missing values - all my missing data points are denoted with NaN >> so that I can include those subjects on

Re: [Freesurfer] Qdec Error: MatrixMultiply: ml is null!

2012-03-01 Thread Laura Tully
nsky wrote: > >> it means to subtract the mean of the icv values from each. that way the >> values are close to zero, and closer in value to the other values in the >> glm (which seems to make the glm happier). >> >> n. >> >> On Thu, 2012-03-01 at 11:04 -0

Re: [Freesurfer] Qdec Error: MatrixMultiply: ml is null!

2012-03-01 Thread Laura Tully
9, 2012 at 2:27 PM, Laura Tully wrote: > Hi Doug, > > Below is the output in the terminal window from running the analysis to > the crash. Attached are the qdec.fsgd and y.fsgd files from the qdec > output. I'm not actually sure what these file represent - could you >

Re: [Freesurfer] Qdec Error: MatrixMultiply: ml is null!

2012-02-29 Thread Laura Tully
2.5936 1255662.3200 MatrixMultiply: m1 is null! No such file or directory On Tue, Feb 28, 2012 at 5:51 PM, Douglas N Greve wrote: > Can you send the fsgd file that is created? Also, please send more text > output. It's hard to tell from a single line. > doug > > Laura Tully wr

[Freesurfer] Qdec Error: MatrixMultiply: ml is null!

2012-02-28 Thread Laura Tully
. Thank you! Laura. -- Laura Tully Social Neuroscience & Psychopathology Harvard University 806 William James Hall 33 Kirkland St Cambridge, MA 02138 ltu...@fas.harvard.edu ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu h