[Freesurfer] Freeview to mark only one specific area

2016-02-11 Thread Luis Fernado Silva Castro de Araújo
Hello Freesurfer experts, I want either a 2D or 3D picture of one of my subjects image, but with only one colored area. For example, I would like to mark the lh_lateralorbitofrontal_area. It seems that the tool to visualize images in Freesurfer is freeview, however I can't find the label for th

[Freesurfer] asegstats2table for all subjects in the directory

2016-01-21 Thread Luis Fernado Silva Castro de Araújo
Hi Freesurfer experts, I wonder if there is a way of extracting the stats for all patients in my last run at the same time. I have around 120 observations and the asegstats2table syntax works in such a way that all the patients names should be listed: asegstats2table --subjects 004 021 040 067 08

[Freesurfer] Virtual machine (in virtual box) generating error: Can't locate MNI/Startup.pm in @INC

2015-12-22 Thread Luis Fernado Silva Castro de Araújo
Hello freesurfers, I installed freesurfer in a linux machine without problems, but when I am trying to install it on a Windows computer within a virtualmachine I keep getting the same error. I’ve tried the instructions in the tutorial and also tried to set an entirely new virtual machine with the

Re: [Freesurfer] Help importing files from a previous SPM analysis

2015-12-21 Thread Luis Fernado Silva Castro de Araújo
t have > information about head orientation. This may cause a catastrophic > failure (eg, the head is upside down). If the head is left-right > reversed, then it probably won't fail but everything will be left-right > reversed. don't say I did not warn you:) > > > On

Re: [Freesurfer] Help importing files from a previous SPM analysis

2015-12-21 Thread Luis Fernado Silva Castro de Araújo
Dear Douglas, It's an anatomical analysis. Perhaps I misunderstood the requirement for setting up the directories in the FSFAST for the recon-all command. If that is the case, it is then a matter of converting my img files into mgz and run recon-all on them, am I right? Does the command recon-al

[Freesurfer] Help importing files from a previous SPM analysis

2015-12-20 Thread Luis Fernado Silva Castro de Araújo
Hi all, I am just starting to learn to analyse neuroimaging data. So these are my first steps with FreeSurfer. I apologize if the question is too basic to the mail list. I set myself the goal of finding volumes for several areas in a dataset from the lab I am working on, but I got stuck very earl