haritable body, registered in
Scotland, with registration number SC005336.
-----Original Message-
From: MIKHAEL Shadia
Sent: 12 January 2018 18:43
To: freesurfer@nmr.mgh.harvard.edu
Subject: external WM and GM masks as input to recon-all?
Dear FreeSurfer experts,
Could you please advise on whet
Dear FreeSurfer experts,
Could you please advise on whether it would be possible to run recon-all in
FreeSurfer 6.0 using externally-derived probabilistic white matter and grey
matter masks, both of which include the cerebellum but not the ventricles, and
if so, how? Would the flag -autorecon2
Perfect. Many thanks once again.
Best wishes,
Shadia
--
The University of Edinburgh is a charitable body, registered in
Scotland, with registration number SC005336.
-Original Message-
From: MIKHAEL Shadia
Sent: 07 January 2018 00:41
To: 'freesurfer@nmr.mgh.harvard.edu'
fArea from
?h.aparc.stats ?
3. mean grey matter thickness: ThickAvg from either of the 2 files
Many thanks once again.
Kind regards,
Shadia
--
The University of Edinburgh is a charitable body, registered in
Scotland, with registration number SC005336.
-Original Message-
From: MI
: MIKHAEL Shadia
Sent: 31 December 2017 11:18
To: 'freesurfer@nmr.mgh.harvard.edu'
Subject: RE: FreeSurfer recon-all issue
Dear Antonin,
Thank you for your suggestions at
https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2017-December/055319.html
. I've tried both, but th
Dear all,
I'm wondering whether you could please clarify the differences between the
?h.aparc.pial.stats and ?h.aparc.stats files which are generated by the
recon-all command in version 6.0. When comparing the content of the 2, some
values are the same, while others (e.g., surface area) are di
