[Freesurfer] MGH35 template

Hi Mark, Sorry for the late reply. The population template was built using the FA images only, so there is no corresponding T1 template image. You can use the transforms stored in dmri/xfms in your TRACULA directory to map the subject’s anatomical images to this template space, or you can set

Re: [Freesurfer] Tracula dpath Missing Files

External Email - Use Caution Hi Lauren, >From the log it actually looks like you have never run "trac-all -c dmrirc >-path", but "trac-all -c dmrirc -prep" twice. Chiara On May 24, 2023, at 11:51 AM, Lauren Stephens mailto:laure...@stanford.edu>> wrote: External Ema

Re: [Freesurfer] Tracula statistics outputs for version 7.2

External Email - Use Caution Hi Alan, It looks like you have specified the ncpts variable but not the pathlist. If you do not specify pathlist, TRACULA will include all 42 tracts by default, so your pathlist and ncpts variables will have different lengths. If you want to focus