Re: [Freesurfer] Creating Anatomical ROI with mri_volsynth

2020-08-19 Thread Mauricio Watanabe Ribeiro
y, assuming identity." So I tried editing the ROI.dat to fsaverage 1.00 1.00 0.15 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 round But the ROI created still goes to the center of the image. What should I do? Em qua., 19 de ago. de 2020 às 15:50, Mauricio Watanabe Ribeiro < mauricio.watan..

Re: [Freesurfer] Creating Anatomical ROI with mri_volsynth

2020-08-19 Thread Mauricio Watanabe Ribeiro
N. Greve < dgr...@mgh.harvard.edu> escreveu: > rh.thickness is a surface overlay, not a volume (which is needed for the > commands you are running). I'm a little confused by what you are trying to > do. Do you want an volume ROI or a surface ROI? > > On 8/18/2020

[Freesurfer] Creating Anatomical ROI with mri_volsynth

2020-08-18 Thread Mauricio Watanabe Ribeiro
External Email - Use Caution Hello Freesurfer Experts, I'm trying to create a ROI based on the peak from a paper. The peak on MNI305 is X=22; Y=-71; Z=22 to use the mri_volsynth I transformed the CRS from MNI to rh.thickness with the formula: Vrh.thickness*inv(Trh.thickness)*R*T30

[Freesurfer] mri_volsynth help

2020-08-12 Thread Mauricio Watanabe Ribeiro
External Email - Use Caution Hi Freesurfers, I'm trying to create a ROI based on peak significance voxel from a paper. They reported a peak at X=21, Y=-71, Z=22 and area of 4,620 mm², based on MNI305. My idea was creating a sphere ROI around this voxel and check its area in the bra