cheers
Bruce
On Tue, 4 Jul 2017, Michael Davies
wrote:
>
> Hello, I have encountered a lopsided hemisphere when analysing the data.
> What procedure do i need to employ to fix the problem? Any advice would be
> greatly appreciated!
>
Hello, I have encountered a lopsided hemisphere when analysing the data. What
procedure do i need to employ to fix the problem? Any advice would be greatly
appreciated!
Kind regards, Michael
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Freesurfer@nmr.mgh.harvard.edu
the directions are correct at the
> beginning (that is, for the file that you give to recon-all as the input).
>
> cheers
> Bruce
>
>
> On Mon, 3 Jul 2017, Michael Davies wrote:
>
>>
>> Hello, i was wondering if you could possibly help me with a subjects file
>> that
Hello, i have been trying to regenerate the surface on one of my subjects but
keep having a problem where the terminal is saying there is a missing file
name. Do you have any suggestions please?
Kind regards, Michael
bash-4.1$ freesurfer_setup_freeview
Hello, i have been trying to regenerate the surface on one of my subjects but
keep having a problem where the terminal is saying there is a missing file
name. Do you have any suggestions please?
Kind regards, Michael
bash-4.1$ freesurfer_setup_freeview
utorecon2-wm -autorecon3 -s Subj2
cheers
Bruce
On Tue, 20
Jun 2017, Michael Davies wrote:
>
> Hello, i am currently having problems with the code required to regenerate
> the surface when editing the WM Volume. I was wondering if you could provide
> any tips or advice as
> to wh
Hello, i am currently having problems with the code required to regenerate the
surface when editing the WM Volume. I was wondering if you could provide any
tips or advice as to where i am going wrong please?
Kind regards, Michael
bash-4.1$ freesurfer_setup_freeview
Hello, i am currently looking at the WM Volume in heat mode and am curious as
to if i need to fill in all the small missing voxels located within the
boundary as well as the bigger holes?
Kind regards, Michael
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if you were in the $SUBJECTS_DIR/$subject dir when you
issued the freeview command.
cheers
Bruce
On Thu, 15 Jun 2017, Michael
Davies wrote:
>
> Hello Bruce, how do you mean the path is wrong? I am curious as the data
> loaded just.
>
&
gt;
Sent: 15 June 2017 16:11:53
To: Freesurfer support list
Subject: Re: [Freesurfer] viewing 3D surfaces
Hi Michael
I think you need to do a Unix tutorial. That path is wrong.
cheers
Bruce
On Thu, 15 Jun
2017, Michael Davies wrote:
>
> Hi Bruce, i'm getting closer to opening it now. But
: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] viewing 3D surfaces
Remove the '/' in front of "surf".
On 06/15/2017 11:45 AM, Michael Davies wrote:
Hi Bruce, i'm getting closer to opening it now. But the final command
/surf/lh.pial \ didnt work this time. Any further sugge
edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Bruce Fischl
<fis...@nmr.mgh.harvard.edu>
Sent: 15 June 2017 15:19:21
To: Freesurfer support list
Subject: Re: [Freesurfer] viewing 3D surfaces
you are not calling freeview in this command. Try putting freeview at the
start
On Thu, 15 Jun 20
u>
Sent: 15 June 2017 14:11
To: Freesurfer support list
Subject: Re: [Freesurfer] viewing 3D surfaces
Hi Michael
you need to have FreeSurfer in your path or nothing will work. Have you
sourced the FreeSurferEnv.sh file? Have you set FREESURFER_HOME in the
environment?
cheers
Bruce
On Thu, 15 Jun 2017,
Hello, i am having problems loading the 3D surface for my data. I was wondering
if you could provide any advice please? This is the command code i put into the
terminal;
bash-4.1$ freeview
Hello, i am having problems accessing the 3D surfaces of my data. Is there any
advice you could provide for me please?
bash-4.1$ freeview -f \
> /projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.pial:annot=aparc.annot:name=pial_aparc:visible=0
> \
>
ou ran that fails and you want our help with?
thanks
Bruce
On Wed, 14
Jun 2017, Michael Davies wrote:
>
> Hi, the server has been down and i currently cannot access my account. I did
> however try putting freeview -f at the beginning before without any luck but
> i will t
quot; at the beginning of
the command.
On 06/14/2017 11:02 AM, Michael Davies wrote:
Hi Ruopeng, this is the command i ran and resulting error message;
bash-4.1$
/projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.pial:annot=aparc.annot:name=pial_aparc:visible=0
\
> /projects/pbic10
e full command line you ran and the error message you
got.
Thanks,
Ruopeng
On Jun 14, 2017, at 9:26 AM, Michael Davies
<michael.davie...@hotmail.com<mailto:michael.davie...@hotmail.com>> wrote:
Hello i am trying to access the data files in 3D but i am having problems
opening t
Hello i am trying to access the data files in 3D but i am having problems
opening the files using the command syntax given on the website.
I have set my own pathway using my own data;
“/projects/pbic1030/Micahel/subjects/Subj1/fsaverage/surf/”
However, one i progress with the code past this
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