[Freesurfer] File input

Hi all FreeSurfer Experts, I'm a young researcher, PhD student of the University of Padua with a degree in Mathematics. I'm trying to use FreeSurfer for analyze a 3D image MRI, DICOM format (I have NIFTI too) to calculate brain volume. I downloaded the software from your site following the instruc

[Freesurfer] recon error

Hi all FreeSurfer Experts, I'm a young researcher, PhD student of the University of Padua with a degree in Mathematics. I'm trying to use FreeSurfer for analyze a 3D image MRI, DICOM format (I have NIFTI too) to calculate brain volume. I ran recon-all -autorecon1 -autorecon2 -subjid <..."file

[Freesurfer] Brain atrophy assess

Dear FreeSurfer Experts, apart from the problem of my previous email I need to ask you more help, can you write the link of a FreeSurfer Manual please? I'm not able to find it in the site: http://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferWiki My basic problem is: I have two CD (for each patie

[Freesurfer] recon-all image output

Dear experts, we run this command in a file of MRI 3D .nii : recon-all -force -all -notal-check -i /my_directory_input/my_file.nii -subjid my_directory_output and i get the attached image of output for a single time point, after 40 hours of elaboration. We don't understand why there isn't the

Re: [Freesurfer] recon-all image output

isn't the right side of the brain. Normal processing time is so high? What can I centre this image? Any suggestions? 2010/7/21 Michele Placci > Dear experts, we run this command in a file of MRI 3D .nii : > > recon-all -force -all -notal-check -i /my_directory_input/my

Re: [Freesurfer] recon-all image output

2010/7/23 Michele Placci > Dear experts, we run this command in a file of MRI 3D .nii : > > recon-all -force -all -notal-check -i /my_directory_input/my_file.nii > -subjid my_directory_output > > and i get the attached image of output for a single time point, after 40 >