Re: [Freesurfer] Pixel values in Brainstem segmentation

2019-07-16 Thread Min Zhang
> > Senior research fellow > > CMIC (UCL), MGH (HMS) and CSAIL (MIT) > > http://www.jeiglesias.com > > > > > > *From: * on behalf of Min Zhang < > jacqueline.m.zh...@gmail.com> > *Reply-To: *Freesurfer support list > *Date: *Tuesday, 16

Re: [Freesurfer] Pixel values in Brainstem segmentation

2019-07-16 Thread Min Zhang
External Email - Use Caution > To whom it may concern > > I used the freesufer brainstem segmentation, and I want to calculate the > area of the segmented brainstem by slices. Would you like to let me know > the pixel value of all three directions. I used the result in > *brainste

[Freesurfer] Pixel values in Brainstem segmentation

2019-07-16 Thread Min Zhang
External Email - Use Caution To whom it may concern I used the freesufer brainstem segmentation, and I want to calculate the area of the segmented brainstem by slices. Would you like to let me know the pixel value of all three directions. Many Thanks! Best Jackie ___

[Freesurfer] Transformation from original dicom to skull striped output

2018-11-12 Thread Min Zhang
External Email - Use Caution Dear Freesufer team: I have marked bounding box in the original DICOM File, and applied autorecon1 to do the skull striping for the images. I want to transfer the bounding box to the skull stripped output. How can I get the coordinates transformation m

[Freesurfer] Cerebellum Segmentation

2018-10-26 Thread Min Zhang
External Email - Use Caution HI, Freesufer Team I want to try to segment the Cerebellum from the Brain MRI, does the freesurfer support the cerebellum segmentation? and how to process it? Many Thanks! Best Min ___ Freesurfer mailing lis

[Freesurfer] How to export the image and label

2018-10-23 Thread Min Zhang
External Email - Use Caution > Dear FreeSurfer Team : > I used the freeSurfer brainstem structure to segment the brainstem from > the MRI successfully. But I have several questions as followed: > > 1. I want to export this data in dcm file with all the ROI information, > what shou

[Freesurfer] How to export the image and label

2018-10-18 Thread Min Zhang
External Email - Use Caution Dear FreeSurfer Team : I used the freeSurfer brainstem structure to segment the brainstem from the MRI successfully. But I have several questions as followed: 1. I want to export this data in dcm file with all the ROI information, what should I do? 2.