Re: [Freesurfer] Is it possible to "fill in" the region delimited by an ROI label?

External Email - Use Caution Hello Dr. Greve, That was exactly what I needed, thank you very much for the help! Thank you, Mohammad From: Mohammad Rashid <17m...@queensu.ca> Sent: Friday, March 20, 2020 11:08 PM To: freesurfer@nmr.mgh.harva

Re: [Freesurfer] Is it possible to "fill in" the region delimited by an ROI label?

: https://i.imgur.com/Rk57Qyh.png . I've gone through the menus along the top as well, but to no avail. Could you direct me to the checkbox you mentioned? I am using freesurfer 6.0 and freeview 2.0. Thank you, Mohammad From: Mohammad Rashid <17m...@queensu.

[Freesurfer] Is it possible to "fill in" the region delimited by an ROI label?

External Email - Use Caution Hi all, I'm able to load in a yellow outline for the entorhinal region by loading a file named ?h.entorhinal_exvivo.label as a volume. (I first load in a brain image such as brain.mgz, and then display the outline on top of it.) Is it possible to ge

[Freesurfer] Project hippocampus to inflated 3D model?

would be useful. Is there perhaps a particular file used for this that I am missing? Any help is appreciated, Mohammad Rashid ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] When rerunning recon-all from a later stage, are only edited participants' reconstructions recalculated?

External Email - Use Caution Ah okay, I understand now, thank you very much for the help! In hindsight this was a stupid question. What you said makes things perfectly clear. Thanks again! From: Mohammad Rashid <17m...@queensu.ca> Sent:

[Freesurfer] When rerunning recon-all from a later stage, are only edited participants' reconstructions recalculated?

External Email - Use Caution I recently ran this command: `recon-all -autorecon2-noaseg -autorecon3 -subjid subj507` after having edited aseg.mgz (there was too much matter labelled as right hippocampus, so my edit was simply overwriting Right-Hippocampus voxels with Right-Cereb

[Freesurfer] Editing a subcortical segmentation and updating aseg.stat accordingly?

External Email - Use Caution Hello all, I've got a scan with an abnormally high Left-Hippocampus volume (based on the measurement in the aseg.stats file). Loading aparc+aseg.mgz and brainmask.mgz into freeview confirms that far too much matter has been labelled as Left-Hippocam

[Freesurfer] Freeview PETSC errors (freeview doesn't start at all)

External Email - Use Caution Hello all, I've looked through the archives extensively but I haven't seen any instances of these particular errors, which I get upon simply typing "freeview" into my console and hitting enter. Note that tksurfer for example does work. I'm on Linux a